LS-CGAT
Long Sequences Customizable Global Alignment Tool
Enter, Edit or
Select file
, where sequence is taken from
to
(
QUERY
)
>Sequence A GTTTTGCGTG GTAAAATCGG CAGATATTCG ATCGGTACAC TCATTGTTGG GTAGCAATCC GGTTGACTCA CGGATCTTCC ACGCGA
Enter, Edit or
Select file
, where sequence is taken from
to
(
SUBJECT
)
>Sequence B TTGATTATTG TTATAAACAG TGGCGTTTCC CCGGCTTCTG GGTGACCTCA TTCGCGAATC ACGGCGTTCG AGACCGCATC TTC
Sequence Alignment
Copy parameters from...
BLAST Global Alignment
EMBOSS Needle
BLAST Global Alignment
EMBOSS Needle
Hamming search
No duplicate gaps
Pam250
Score matrix
A T G C S W R Y K M B V H D N A 2 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 T -3 2 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 G -3 -3 2 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 C -3 -3 -3 2 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 S -3 -3 -3 -3 2 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 W -3 -3 -3 -3 -3 2 -3 -3 -3 -3 -3 -3 -3 -3 -3 R -3 -3 -3 -3 -3 -3 2 -3 -3 -3 -3 -3 -3 -3 -3 Y -3 -3 -3 -3 -3 -3 -3 2 -3 -3 -3 -3 -3 -3 -3 K -3 -3 -3 -3 -3 -3 -3 -3 2 -3 -3 -3 -3 -3 -3 M -3 -3 -3 -3 -3 -3 -3 -3 -3 2 -3 -3 -3 -3 -3 B -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 2 -3 -3 -3 -3 V -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 2 -3 -3 -3 H -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 2 -3 -3 D -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 2 -3 N -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 2
case sensitive
Gap penalties
for Query
Open
Extend
Model
Gaps
for Subject
Gap priority
(back-tracing)
No gap > Query > Subject
No gap > Subject > Query
Query > No gap > Subject
Query > Subject > No gap
Subject > No gap > Query
Subject > Query > No gap
* > * > * (Random)
Parallel computing
Max cores
Query's split
Subject's split
Manual
